====== Help PROBAword ======


This program is dedicated to the computation, at each position in the sequence, of the probability of a word according to a Drifting Markov Model (DMM).
===== Description of parameters =====


** -w <word>**  Word to studied.

** -a <alphabet_file>**  A file describing the alphabet to use.

** -SpM**  Estimation by splines (global).

** -Spl**  Estimation by splines (basis functions).

** -SpH**  Estimation by splines (no basis functions).

** -Poly**  Estimation by polynom (stochastic matrices).

** -PolyM**  Estimation by polynom (no stochastic matrices).

** [-pos <in> <out>]** Compute the probabilities of the word for positions in to out.

** -cf <config_file>**  DMM is given by the config_file.

** -h**  Print this help.
===== Examples =====

<code>
PROBAword -w gct -a dna.alpha -Poly -cf config.out
</code>