====== Help PVALUEdmm ======


This program is dedicated to the computation of pvalue of words. It needs a markov file generated by Spatt(*). Results are given at this order:

Word Nobs Expectation - log(P(N>Nobs) P(N>Nobs)      if  Nobs>=E(N)\\
Word Nobs Expectation +log(P(N<Nobs) P(N<Nobs)      if  Nobs<E(N)
===== Description of parameters =====


** -w <word>**  Word to studied.

** -c <Nobs>=0>**  Number of occurrences of word.

** -a <alphabet_file>**  A file describing the alphabet to use.

** -m <markov_file>**  Markov_file of xspatt program.

** -SpM**  Estimation by splines (global).

** -Spl**  Estimation by splines (basis functions).

** -SpH**  Estimation by splines (no basis functions).

**-Poly**  Estimation by polynom (stochastic matrices).

** -PolyM**  Estimation by polynom (no stochastic matrices).

** -cf <config_file>**  DMM is given by the config_file.

** -h**  Print this help.

===== Examples =====

<code> PVALUEdmm -w gc -c 45 -a dna.alpha -m gc.markov -Poly -cf config.out</code>