http://www.math-evry.cnrs.fr/ 2026-04-13T09:45:46+02:00 http://www.math-evry.cnrs.fr/ http://www.math-evry.cnrs.fr/lib/tpl/lamme/images/favicon.ico text/html 2014-11-28T15:51:52+02:00 http://www.math-evry.cnrs.fr/logiciels/mixnet/examples?rev=1417186312&do=diff MixNet examples E.Coli regulatory network (Mangan et. al., PNAS, 2003) * [Network file] * [Analysis] * Nodes groups for [Q=5] and [Q=12] Macaque cortex network (Sporns et. al., PLoS One, 2007) * [Network file] * [Analysis] * Nodes groups for [Q=3] and [Q=8] Grassland species interactions network text/html 2014-11-28T15:51:52+02:00 http://www.math-evry.cnrs.fr/logiciels/mixnet/iospec?rev=1417186312&do=diff MixNet software: I/O specification Please read the man page for a complete description of the software use. The following description is nothing but a brief summary of the software I/O specifications. Input * a .spm file containing the network as a sparse matrix, with the following format (the first is for the source nodes): text/html 2014-11-28T15:51:52+02:00 http://www.math-evry.cnrs.fr/logiciels/mixnet/mixnet?rev=1417186312&do=diff MixNet This program implements the variationnal EM algorithm for directed and undirected networks. Running mixnet mixnet -q <int> -Q <int> <filename.spm> [options] Main options are: * - -undirected : Specifies that the network is undirected text/html 2014-11-28T15:51:52+02:00 http://www.math-evry.cnrs.fr/logiciels/mixnet/mixneto?rev=1417186312&do=diff mixneto This program implements on-line methods for large undirected networks. Running ermgo mixneto -q <int> -Q <int> <filename.spm> [options] Main options are: * - - classif : Use the classification algorithm * - - stochastic : Use the stochastic classification algorithm text/html 2014-11-28T15:51:52+02:00 http://www.math-evry.cnrs.fr/logiciels/mixnet/practise?rev=1417186312&do=diff Discovering mixnet with a short practice (requires the installation of gnuplot and Cytoscape) # upload (remplacer ???? par le numero de version) wget <http://stat.genopole.cnrs.fr/_media/logiciels/mixnet/mixnet-1.????.tar.gz> # extraction tar zxvf mixnet-1.????.tar.gz # licence cd mixnet-1.0.0 more COPYING # compilation and installation$0+1):($$0+1):($$0+1):($$0+1):($$0+1):($