logiciels:drimm:help_probword

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+ | ====== Help PROBAword ====== | ||

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+ | This program is dedicated to the computation, at each position in the sequence, of the probability of a word according to a Drifting Markov Model (DMM). | ||

+ | ===== Description of parameters ===== | ||

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+ | ** -w <word>** Word to studied. | ||

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+ | ** -a <alphabet_file>** A file describing the alphabet to use. | ||

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+ | ** -SpM** Estimation by splines (global). | ||

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+ | ** -Spl** Estimation by splines (basis functions). | ||

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+ | ** -SpH** Estimation by splines (no basis functions). | ||

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+ | ** -Poly** Estimation by polynom (stochastic matrices). | ||

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+ | ** -PolyM** Estimation by polynom (no stochastic matrices). | ||

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+ | ** [-pos <in> <out>]** Compute the probabilities of the word for positions in to out. | ||

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+ | ** -cf <config_file>** DMM is given by the config_file. | ||

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+ | ** -h** Print this help. | ||

+ | ===== Examples ===== | ||

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+ | <code> | ||

+ | PROBAword -w gct -a dna.alpha -Poly -cf config.out | ||

+ | </code> | ||

logiciels/drimm/help_probword.txt · Last modified: 2014/11/28 15:51 (external edit)

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