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publications:logiciels [2015/09/07 15:34]
Pierre Neuvial
publications:logiciels [2015/09/07 15:35] (current)
Pierre Neuvial
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 ===== Network Inference ===== ===== Network Inference =====
  
-  * [[http://​cran.r-project.org/​web/​packages/​G1DBN/​index.html|G1DBN]]\\ +  * [[http://​cran.r-project.org/​web/​packages/​G1DBN/​index.html|G1DBN]]:​ R package for reconstruction of gene regulatory networks. G1DBN performs dynamic Bayesian network (DBN) inference using 1st order conditional dependencies. 
-//Module R pour la reconstruction de réseaux génétiques ​inférence d'un réseau bayésien dynamique à partir d'​indépendence d'​ordre 1.//\\ +  * [[:​logiciels:​simone|Simone]]
-R package for reconstruction of gene regulatory networks. G1DBN performs dynamic Bayesian network (DBN) inference using 1st order conditional dependencies. +
- +
-  * [[:​logiciels:​simone|Simone]]\\ +
-SIMoNe (Statistical Inference for MOdular NEtworks) is a R package which enables inference of gene-regulatory networks based on partial correlation coefficients from microarray experiments. Modelling gene expression data with a Gaussian Graphical Model, the algorithm estimates nonzero entries of the concentration matrix, in a sparse and possibly high-dimensional setting. Its originality lies in the fact that it searches for a latent modular structure to drive the inference procedure through adaptive penalization of the concentration matrix. +
  
 ===== Sequence Analysis ===== ===== Sequence Analysis =====
publications/logiciels.txt · Last modified: 2015/09/07 15:35 by Pierre Neuvial

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