no way to compare when less than two revisions

Differences

This shows you the differences between two versions of the page.

@@ Line 1: / Line 1: @@
+====== Help PVALUEdmm ======
+This program is dedicated to the computation of pvalue of words. It needs a markov file generated by Spatt(*). Results are given at this order:
+Word Nobs Expectation - log(P(N>Nobs) P(N>Nobs)      if  Nobs>=E(N)\\
+Word Nobs Expectation +log(P(N<Nobs) P(N<Nobs)      if  Nobs<E(N)
+===== Description of parameters =====
+** -w <word>**  Word to studied.
+** -c <Nobs>=0>**  Number of occurrences of word.
+** -a <alphabet_file>**  A file describing the alphabet to use.
+** -m <markov_file>**  Markov_file of xspatt program.
+** -SpM**  Estimation by splines (global).
+** -Spl**  Estimation by splines (basis functions).
+** -SpH**  Estimation by splines (no basis functions).
+**-Poly**  Estimation by polynom (stochastic matrices).
+** -PolyM**  Estimation by polynom (no stochastic matrices).
+** -cf <config_file>**  DMM is given by the config_file.
+** -h**  Print this help.
+===== Examples =====
+<code> PVALUEdmm -w gc -c 45 -a dna.alpha -m gc.markov -Poly -cf config.out</code>