- Productions scientifiques
This program is dedicated to the computation of pvalue of words. It needs a markov file generated by Spatt(*). Results are given at this order:
Word Nobs Expectation - log(P(N>Nobs) P(N>Nobs) if Nobs>=E(N)
Word Nobs Expectation +log(P(N<Nobs) P(N<Nobs) if Nobs<E(N)
-w <word> Word to studied.
-c <Nobs>=0> Number of occurrences of word.
-a <alphabet_file> A file describing the alphabet to use.
-m <markov_file> Markov_file of xspatt program.
-SpM Estimation by splines (global).
-Spl Estimation by splines (basis functions).
-SpH Estimation by splines (no basis functions).
-Poly Estimation by polynom (stochastic matrices).
-PolyM Estimation by polynom (no stochastic matrices).
-cf <config_file> DMM is given by the config_file.
-h Print this help.
PVALUEdmm -w gc -c 45 -a dna.alpha -m gc.markov -Poly -cf config.out