logiciels:drimm:help_pvalue

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+ | ====== Help PVALUEdmm ====== | ||

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+ | This program is dedicated to the computation of pvalue of words. It needs a markov file generated by Spatt(*). Results are given at this order: | ||

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+ | Word Nobs Expectation - log(P(N>Nobs) P(N>Nobs) if Nobs>=E(N)\\ | ||

+ | Word Nobs Expectation +log(P(N<Nobs) P(N<Nobs) if Nobs<E(N) | ||

+ | ===== Description of parameters ===== | ||

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+ | ** -w <word>** Word to studied. | ||

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+ | ** -c <Nobs>=0>** Number of occurrences of word. | ||

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+ | ** -a <alphabet_file>** A file describing the alphabet to use. | ||

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+ | ** -m <markov_file>** Markov_file of xspatt program. | ||

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+ | ** -SpM** Estimation by splines (global). | ||

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+ | ** -Spl** Estimation by splines (basis functions). | ||

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+ | ** -SpH** Estimation by splines (no basis functions). | ||

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+ | **-Poly** Estimation by polynom (stochastic matrices). | ||

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+ | ** -PolyM** Estimation by polynom (no stochastic matrices). | ||

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+ | ** -cf <config_file>** DMM is given by the config_file. | ||

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+ | ** -h** Print this help. | ||

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+ | ===== Examples ===== | ||

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+ | <code> PVALUEdmm -w gc -c 45 -a dna.alpha -m gc.markov -Poly -cf config.out</code> | ||

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logiciels/drimm/help_pvalue.txt · Last modified: 2014/11/28 15:51 (external edit)

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