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logiciels:drimm:help_pvalue

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logiciels:drimm:help_pvalue [2014/11/28 15:51] (current)
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 +====== Help PVALUEdmm ======
 +
 +
 +This program is dedicated to the computation of pvalue of words. It needs a markov file generated by Spatt(*). Results are given at this order:
 +
 +Word Nobs Expectation - log(P(N>​Nobs) P(N>​Nobs) ​     if  Nobs>​=E(N)\\
 +Word Nobs Expectation +log(P(N<​Nobs) P(N<​Nobs) ​     if  Nobs<​E(N)
 +===== Description of parameters =====
 +
 +
 +** -w <​word>​** ​ Word to studied.
 +
 +** -c <​Nobs>​=0>​** ​ Number of occurrences of word.
 +
 +** -a <​alphabet_file>​** ​ A file describing the alphabet to use.
 +
 +** -m <​markov_file>​** ​ Markov_file of xspatt program.
 +
 +** -SpM** ​ Estimation by splines (global).
 +
 +** -Spl** ​ Estimation by splines (basis functions).
 +
 +** -SpH** ​ Estimation by splines (no basis functions).
 +
 +**-Poly** ​ Estimation by polynom (stochastic matrices).
 +
 +** -PolyM** ​ Estimation by polynom (no stochastic matrices).
 +
 +** -cf <​config_file>​** ​ DMM is given by the config_file.
 +
 +** -h**  Print this help.
 +
 +===== Examples =====
 +
 +<​code>​ PVALUEdmm -w gc -c 45 -a dna.alpha -m gc.markov -Poly -cf config.out</​code>​
 +
  
logiciels/drimm/help_pvalue.txt · Last modified: 2014/11/28 15:51 (external edit)

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