User Tools

Site Tools


logiciels:drimm:help_probword

Help PROBAword

This program is dedicated to the computation, at each position in the sequence, of the probability of a word according to a Drifting Markov Model (DMM).

Description of parameters

** -w <word>** Word to studied.

** -a <alphabet_file>** A file describing the alphabet to use.

** -SpM** Estimation by splines (global).

** -Spl** Estimation by splines (basis functions).

** -SpH** Estimation by splines (no basis functions).

** -Poly** Estimation by polynom (stochastic matrices).

** -PolyM** Estimation by polynom (no stochastic matrices).

** [-pos <in> <out>]** Compute the probabilities of the word for positions in to out.

** -cf <config_file>** DMM is given by the config_file.

** -h** Print this help.

Examples

PROBAword -w gct -a dna.alpha -Poly -cf config.out
logiciels/drimm/help_probword.txt · Last modified: by 127.0.0.1

Page Tools