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members:adehman:welcome

Alia Dehman

Doctorante (UEVE)
Université d'Évry Val d'Essonne
Laboratoire de Mathématiques et Modélisation d'Évry (UMR 8071)
I.B.G.B.I., 23 Bd. de France, 91037 Évry Cedex
☎ +33 (0) 1 64 85 35 36
📠: +33 1 64 85 36 01
Firstname.Lastname@genopole.cnrs.fr

Topic of the thesis

I am working on incorporating the linkage disequilibrium (LD) information in Genome-Wide association studies.

Research topics

  • Genome-Wide Association Studies (GWAS)
  • Linkage Disequilibrium (LD)
  • Structured penalized regression models

Publications

2015
[1] (Theses)
[2]
Dehman, A., Ambroise, C. & Neuvial, P. Performance of a blockwise approach in variable selection using linkage disequilibrium information. BMC Bioinformatics, pages 14, BioMed Central, 2015. implementation
2013
[3]
Dehman, A., Ambroise, C. & Neuvial, P. Incorporating linkage disequilibrium blocks in Genome-Wide Association Studies. In JOBIM proceeding 2013, ():, , 2013.
[4]

Seminars and Posters

  • Statistics for Systems Biology (SSB), Evry, June 2013

Slides slides_ssb

  • Software and Statistical Methods for Population Genetics (SSMPG), Aussois, 2013

Poster poster_SSMPG

  • Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Toulouse, July 2013

Extended abstract ex_abs

Slides slides_jobim

Software

  • “Blockwise Approach using Linkage Disequilibrium information” (BALD) :

The BALD R package provides functions for the Genome-Wide Association Studies including simulation of SNPs data, constrained hierarchical clustering using Linkage Disequilibrium (LD) measures, the Gap statistic to find the optimal number of clusters, and statistical regression models for SNP selection (Univariate, Lasso, Group Lasso, Elastic-Net).

Package source : http://www.math-evry.cnrs.fr/logiciels/bald

Teaching

  • L1 Bio: Analysis
  • L2 Math and L2 Info: Probabilities and Statistics

A competition award

The Audience Award in the local stage of the competition “Ma thèse en 180 secondes” in Evry MT180-Evry.

Internship

members/adehman/welcome.txt · Last modified: 2016/01/21 11:00 by Alia Dehman

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