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members:pneuvial:teaching:isg
Programming for Genomics
M2 ISG, 2015-2016
Agenda
| Date | Title | Materials |
|---|---|---|
| 11/19 | Data structures in R, by Julien Chiquet | see J. Chiquet's page |
| 11/27 | Naive approaches to segmentation | (zipped) .Rmd; .pdf |
| 12/04 | Segmentation by dynamic programming 1 | .pdf; R code |
| 12/11 | Advanced R programming | J. Chiquet's slides; Slides by D. Eddelbuettel |
| 12/11 | Segmentation by dynamic programming 2 | Questions; Solutions; Source files |
| 12/18 | Recursive binary segmentation + fused lasso | No notes available |
| 12/18 | Reproducible research in genomics | Introduction (pdf); Slides from K. Baggerly; Recent news on the "Duke saga" |
| 01/08 | Exam (1:00 PM-3:00 PM) |
Some topics covered:
- Computational/statistical tradeoffs when implementing statistical methods for genomic applications
- Reproducible research
- Interfacing R code with C++
Links
- Course Introduction à la programmation by Julien Chiquet and references therein
R package repositories dedicated to genomics:
members/pneuvial/teaching/isg.txt · Last modified: 2015/12/18 17:14 by pneuvial
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